Command Line Interface

ols_client automatically installs the command ols_client. See ols_client --help for usage details.

ols_client

Run the OLS Client Command Line Interface.

ols_client [OPTIONS] COMMAND [ARGS]...

ancestors

Output the ancestors of the given term.

ols_client ancestors [OPTIONS] ONTOLOGY

Options

--iri <iri>

Required

-b, --base-url <base_url>
Default:

http://www.ebi.ac.uk/ols

Arguments

ONTOLOGY

Required argument

labels

Output the names to the given file.

ols_client labels [OPTIONS] ONTOLOGY

Options

-b, --base-url <base_url>
Default:

http://www.ebi.ac.uk/ols

Arguments

ONTOLOGY

Required argument

suggest

Suggest a term based on th given query.

ols_client suggest [OPTIONS] QUERY

Options

--ontology <ontology>
-b, --base-url <base_url>
Default:

http://www.ebi.ac.uk/ols

Arguments

QUERY

Required argument