Command Line Interface
ols_client automatically installs the command ols_client
. See
ols_client --help
for usage details.
ols_client
Run the OLS Client Command Line Interface.
ols_client [OPTIONS] COMMAND [ARGS]...
ancestors
Output the ancestors of the given term.
ols_client ancestors [OPTIONS] ONTOLOGY
Options
- --iri <iri>
Required
- -b, --base-url <base_url>
- Default:
http://www.ebi.ac.uk/ols
Arguments
- ONTOLOGY
Required argument
labels
Output the names to the given file.
ols_client labels [OPTIONS] ONTOLOGY
Options
- -b, --base-url <base_url>
- Default:
http://www.ebi.ac.uk/ols
Arguments
- ONTOLOGY
Required argument
search
Search the OLS with the given query.
ols_client search [OPTIONS] QUERY
Options
- -b, --base-url <base_url>
- Default:
http://www.ebi.ac.uk/ols
Arguments
- QUERY
Required argument
suggest
Suggest a term based on th given query.
ols_client suggest [OPTIONS] QUERY
Options
- --ontology <ontology>
- -b, --base-url <base_url>
- Default:
http://www.ebi.ac.uk/ols
Arguments
- QUERY
Required argument